Index

_

__enter__() (moldyn.utils.data_mng.ParamIO method)

__exit__() (moldyn.utils.data_mng.ParamIO method) _m() (moldyn.simulation.builder.Model method)

A

atom_grid() (moldyn.simulation.builder.Model method)

C

cached() (in module moldyn.processing.data_proc) close() (moldyn.utils.data_mng.NumpyIO method) compute_strain() (in module moldyn.processing.data_proc)

consts (moldyn.simulation.forces_GPU.ForcesComputeGPU attribute) context (moldyn.simulation.runner.Simulation attribute) copy() (moldyn.simulation.builder.Model method) current_iter (moldyn.simulation.runner.Simulation attribute)

D

density() (in module moldyn.processing.data_proc) dt (moldyn.simulation.builder.Model attribute)

DynState (class in moldyn.utils.data_mng) dynState (moldyn.utils.data_mng.NumpyIO attribute) (moldyn.utils.data_mng.ParamIO attribute)

E

EC (moldyn.simulation.builder.Model attribute) epsilon_a (moldyn.simulation.builder.Model attribute)

epsilon_ab (moldyn.simulation.builder.Model attribute) epsilon_b (moldyn.simulation.builder.Model attribute)

F

F (moldyn.simulation.runner.Simulation attribute) F_f() (moldyn.simulation.runner.Simulation method) file (moldyn.utils.data_mng.NumpyIO attribute) file_name (moldyn.utils.data_mng.NumpyIO attribute) (moldyn.utils.data_mng.ParamIO attribute)

ForcesComputeCPU (class in moldyn.simulation.forces_CPU) ForcesComputeGPU (class in moldyn.simulation.forces_GPU) from_dict() (moldyn.utils.data_mng.ParamIO method)

G

get_COUNT() (moldyn.simulation.forces_GPU.ForcesComputeGPU method)

get_F() (moldyn.simulation.forces_GPU.ForcesComputeGPU method) get_PE() (moldyn.simulation.forces_GPU.ForcesComputeGPU method)

I

inter_species_rule (moldyn.simulation.builder.Model attribute)

iter() (moldyn.simulation.runner.Simulation method)

K

kB (moldyn.simulation.builder.Model attribute)

kong (moldyn.simulation.builder.Model attribute)

L

length (moldyn.simulation.builder.Model attribute) length_x (moldyn.simulation.builder.Model attribute) length_y (moldyn.simulation.builder.Model attribute)

lim_inf (moldyn.simulation.builder.Model attribute) lim_sup (moldyn.simulation.builder.Model attribute) load() (moldyn.utils.data_mng.NumpyIO method)

M

m (moldyn.simulation.builder.Model attribute) make_movie() (in module moldyn.processing.visualisation) mass (moldyn.simulation.builder.Model attribute) mode (moldyn.utils.data_mng.NumpyIO attribute) Model (class in moldyn.simulation.builder) model (moldyn.simulation.runner.Simulation attribute) module moldyn.processing.data_proc moldyn.processing.visualisation moldyn.simulation.builder moldyn.simulation.forces_CPU moldyn.simulation.forces_GPU moldyn.simulation.runner moldyn.utils.data_mng moldyn.utils.gl_util

moldyn.processing.data_proc module moldyn.processing.visualisation module moldyn.simulation.builder module moldyn.simulation.forces_CPU module moldyn.simulation.forces_GPU module moldyn.simulation.runner module moldyn.utils.data_mng module moldyn.utils.gl_util module

N

n_a (moldyn.simulation.builder.Model attribute) npart (moldyn.simulation.builder.Model attribute) (moldyn.simulation.forces_GPU.ForcesComputeGPU attribute)

NumpyIO (class in moldyn.utils.data_mng)

O

open() (moldyn.utils.data_mng.DynState method) (moldyn.utils.data_mng.NumpyIO method)

P

PAR (moldyn.utils.data_mng.DynState attribute) ParamIO (class in moldyn.utils.data_mng) params (moldyn.simulation.builder.Model attribute) PDF() (in module moldyn.processing.data_proc) plot_density() (in module moldyn.processing.visualisation)

plot_density_surf() (in module moldyn.processing.visualisation) plot_densityf() (in module moldyn.processing.visualisation) plot_particles() (in module moldyn.processing.visualisation) pos (moldyn.simulation.builder.Model attribute) POS (moldyn.utils.data_mng.DynState attribute) POS_H (moldyn.utils.data_mng.DynState attribute)

R

random_speed() (moldyn.simulation.builder.Model method) rcut_fact (moldyn.simulation.builder.Model attribute)

re_a (moldyn.simulation.builder.Model attribute) re_ab (moldyn.simulation.builder.Model attribute) re_b (moldyn.simulation.builder.Model attribute)

S

save() (moldyn.utils.data_mng.NumpyIO method) save_model() (moldyn.utils.data_mng.DynState method) set_a() (moldyn.simulation.builder.Model method) set_ab() (moldyn.simulation.builder.Model method) set_b() (moldyn.simulation.builder.Model method) set_dt() (moldyn.simulation.builder.Model method) set_Fx_ramps() (moldyn.simulation.runner.Simulation method) set_Fy_ramps() (moldyn.simulation.runner.Simulation method) set_periodic_boundary() (moldyn.simulation.builder.Model method)

set_pos() (moldyn.simulation.forces_GPU.ForcesComputeGPU method) set_T_f() (moldyn.simulation.runner.Simulation method) set_T_ramps() (moldyn.simulation.runner.Simulation method) shuffle_atoms() (moldyn.simulation.builder.Model method) sigma_a (moldyn.simulation.builder.Model attribute) sigma_ab (moldyn.simulation.builder.Model attribute) sigma_b (moldyn.simulation.builder.Model attribute) Simulation (class in moldyn.simulation.runner) source() (in module moldyn.utils.gl_util) STATE_FCT (moldyn.utils.data_mng.DynState attribute)

T

T (moldyn.simulation.builder.Model attribute) testGL() (in module moldyn.utils.gl_util) to_attr() (moldyn.utils.data_mng.ParamIO method)

to_dict() (moldyn.utils.data_mng.ParamIO method) to_zip() (moldyn.utils.data_mng.DynState method) total_EC (moldyn.simulation.builder.Model attribute)

V

v (moldyn.simulation.builder.Model attribute)

VEL (moldyn.utils.data_mng.DynState attribute)

X

x_a (moldyn.simulation.builder.Model attribute) x_lim_inf (moldyn.simulation.builder.Model attribute)

x_lim_sup (moldyn.simulation.builder.Model attribute) x_periodic (moldyn.simulation.builder.Model attribute)

Y

y_lim_inf (moldyn.simulation.builder.Model attribute)

y_lim_sup (moldyn.simulation.builder.Model attribute) y_periodic (moldyn.simulation.builder.Model attribute)